EnhancerDB
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Enhancers that have rs548085[chr1:54739583]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 54732705 54747095 enh11864
Bone Marrow (K562) Astrocyte Adrenal Pancreas Uterus Kidney Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs548085[chr1:54739583]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 54739157 54739866 CTCF UCSC Txn Factor no Conserved 107804668
chr1 54739178 54739694 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107804669
chr1 54739186 54739716 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107804670
chr1 54739354 54739998 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107804671
chr1 54739414 54739890 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107804672
chr1 54739424 54739794 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107804673
chr1 54739436 54739760 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107804674
chr1 54739454 54739894 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107804675
chr1 54739466 54739902 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107804676
chr1 54739467 54739827 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107804677
chr1 54739469 54739813 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107804678
chr1 54739471 54739871 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107804679
chr1 54739476 54739866 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107804680
chr1 54739478 54739878 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107804681
chr1 54739501 54739871 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107804682
chr1 54739510 54739820 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107804683
chr1 54739515 54739971 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107804684
chr1 54739530 54739806 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107804685
chr1 54739541 54739729 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107804686
chr1 54739541 54739801 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107804687
chr1 54739541 54739917 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107804688
chr1 54739543 54739804 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107804689
chr1 54739550 54739796 EGR1 UCSC Txn Factor no Conserved 107804690
chr1 54739550 54739796 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107804691
chr1 54739556 54739832 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107804692
chr1 54739578 54739838 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107804693
chr1 54739583 54739597 TLX1 JASPAR yes 28967342
chr1 54739583 54739598 TFAP2A JASPAR yes 28967343
chr1 54739583 54739598 TFAP2C JASPAR yes 28967344
Genes associated with rs548085[chr1:54739583], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More