EnhancerDB
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  3. rs550172853[chr19:3518270]
Enhancers that have rs550172853[chr19:3518270]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 3503817 3522715 enh4965
Bone Marrow (K562) Skin (Keratinocyte) Prostate (PC-3) Brain (SK-N-SH) Prostate (RWPE1) Blood (T-cell) Astrocyte Bone (Osteoblast) Colon (HCT116) Adrenal Blood (Karpas-422) Pancreas Thymus Epithelial (MCF-7)
Transcript factors that have rs550172853[chr19:3518270]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 3517583 3521643 ZNF274 GTRD no Cervix (HeLa-S3) 108367415
chr19 3517583 3521643 ZNF274 GTRD no Cervix (HeLa-S3) 108367416
chr19 3518256 3518271 NR2C2 JASPAR yes 112137087
chr19 3518257 3518271 PLAG1 JASPAR yes 112137088
chr19 3518263 3518277 GLIS2 JASPAR yes 112137089
chr19 3518263 3518277 GLIS3 JASPAR yes 112137090
chr19 3518263 3518277 ZIC1 JASPAR yes 112137091
chr19 3518263 3518278 ZIC3 JASPAR yes 112137092
chr19 3518263 3518278 ZIC4 JASPAR yes 112137093
chr19 3518267 3518281 PLAG1 JASPAR yes 112137094
Genes associated with rs550172853[chr19:3518270], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More