EnhancerDB
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  3. rs550342319[chr19:1853205]
Enhancers that have rs550342319[chr19:1853205]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 1850045 1876795 enh4955
Bone Marrow (K562) Liver (HepG2) Cervix (HeLa-S3) Brain (SK-N-SH) Large Intestine Prostate (RWPE1) Blood (T-cell) Bone (Osteoblast) Blood (GM12878) Placenta Blood (Karpas-422) Pancreas Uterus Thymus
Transcript factors that have rs550342319[chr19:1853205]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 1850548 1866188 TCF7L2 GTRD no Colon (HCT116) 108355215
chr19 1850548 1866188 TCF7L2 GTRD no Colon (HCT116) 108355216
chr19 1850548 1866188 TCF7L2 GTRD no Colon (HCT116) 108355217
chr19 1850599 1854179 ZNF274 GTRD no Blood (GM12878) 21832658
chr19 1850599 1856222 TCF7L2 GTRD no Colon (HCT116) 108355218
chr19 1850727 1858520 TCF7L2 GTRD no Colon (HCT116) 108355219
chr19 1850727 1858520 TCF7L2 GTRD no Colon (HCT116) 108355220
chr19 1850727 1858520 TCF7L2 GTRD no Colon (HCT116) 108355221
chr19 1851001 1866019 ZNF274 GTRD no Bone Marrow (K562) 21832698
chr19 1851001 1866019 ZNF274 GTRD no Bone Marrow (K562) 108355222
chr19 1851001 1866019 ZNF274 GTRD no Bone Marrow (K562) 108355223
chr19 1851001 1866019 ZNF274 GTRD no Bone Marrow (K562) 108355224
chr19 1851750 1854173 ZNF274 GTRD no Bone Marrow (K562) 21832703
chr19 1851964 1854134 ZNF274 GTRD no Blood (GM12878) 21832709
chr19 1852617 1856671 ZNF143 GTRD no Epithelial (MCF-7) 108355225
chr19 1852846 1856263 ZNF143 GTRD no Epithelial (MCF-7) 108355226
chr19 1853045 1857793 ZNF274 GTRD no Bone Marrow (K562) 21832711
chr19 1853045 1857793 ZNF274 GTRD no Bone Marrow (K562) 108355227
chr19 1853045 1857793 ZNF274 GTRD no Bone Marrow (K562) 108355228
chr19 1853045 1857793 ZNF274 GTRD no Bone Marrow (K562) 108355229
chr19 1853089 1856902 TCF7L2 GTRD no Colon (HCT116) 108355230
chr19 1853089 1856902 TCF7L2 GTRD no Colon (HCT116) 108355231
chr19 1853105 1856400 ZBTB33 GTRD no Lung (A549) 108355232
chr19 1853194 1853206 ZBTB7B JASPAR yes 112032418
chr19 1853195 1853211 GLIS1 JASPAR yes 112032419
chr19 1853195 1853215 RREB1 JASPAR yes 112032420
chr19 1853196 1853206 ZNF740 JASPAR yes 112032421
chr19 1853196 1853210 GLIS2 JASPAR yes 112032422
chr19 1853196 1853210 GLIS3 JASPAR yes 112032423
chr19 1853197 1853217 RREB1 JASPAR yes 112032424
chr19 1853198 1853208 ZNF740 JASPAR yes 112032425
chr19 1853198 1853212 PLAG1 JASPAR yes 112032426
chr19 1853199 1853219 RREB1 JASPAR yes 112032427
chr19 1853200 1853214 PLAG1 JASPAR yes 112032428
chr19 1853201 1853221 RREB1 JASPAR yes 112032429
chr19 1853205 1853225 RREB1 JASPAR yes 112032430
Genes associated with rs550342319[chr19:1853205], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More