EnhancerDB
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  3. rs550916390[chr1:39577037]
Enhancers that have rs550916390[chr1:39577037]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 39562325 39585995 enh11758
Bone Marrow (K562) Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Prostate (RWPE1) Ovary Esophagus Astrocyte Liver Lung (PC-9) Bone (Osteoblast) Blood (GM12878) Muscle (A673) Placenta Colon (HCT116) Muscle (Myoblast) Pancreas Uterus
Transcript factors that have rs550916390[chr1:39577037]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 39577028 39577038 POU6F2 JASPAR yes 28252670
chr1 39577029 39577039 EMX1 JASPAR yes 28252671
chr1 39577029 39577039 EMX2 JASPAR yes 28252672
chr1 39577029 39577039 ESX1 JASPAR yes 28252673
chr1 39577029 39577039 EVX1 JASPAR yes 28252674
chr1 39577029 39577039 EVX2 JASPAR yes 28252675
chr1 39577029 39577039 GBX2 JASPAR yes 28252676
chr1 39577029 39577039 HESX1 JASPAR yes 28252677
chr1 39577029 39577039 HOXA2 JASPAR yes 28252678
chr1 39577029 39577039 HOXB2 JASPAR yes 28252679
chr1 39577029 39577039 HOXB3 JASPAR yes 28252680
chr1 39577029 39577039 LHX2 JASPAR yes 28252681
chr1 39577029 39577039 LHX6 JASPAR yes 28252682
chr1 39577029 39577039 MEOX1 JASPAR yes 28252683
chr1 39577029 39577039 MEOX2 JASPAR yes 28252684
chr1 39577029 39577039 POU6F1 JASPAR yes 28252685
chr1 39577029 39577039 RAX JASPAR yes 28252686
chr1 39577030 39577038 LBX1 JASPAR yes 28252687
chr1 39577030 39577038 PDX1 JASPAR yes 28252688
chr1 39577030 39577038 VAX1 JASPAR yes 28252689
chr1 39577030 39577038 VAX2 JASPAR yes 28252690
chr1 39577030 39577038 VSX1 JASPAR yes 28252691
chr1 39577030 39577038 VSX2 JASPAR yes 28252692
chr1 39577031 39577042 PHOX2A JASPAR yes 28252693
chr1 39577031 39577042 PROP1 JASPAR yes 28252694
chr1 39577035 39577039 YY1 TRANSFAC yes 28252695
chr1 39577036 39577051 FOXA1 JASPAR yes 28252696
chr1 39577037 39577049 FOXI1 JASPAR yes 28252697
chr1 39577037 39577051 POU4F1 JASPAR yes 28252698
chr1 39577037 39577052 FOXP1 JASPAR yes 28252699
chr1 39577037 39577052 HNF1A JASPAR yes 28252700
Genes associated with rs550916390[chr1:39577037], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More