EnhancerDB
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  3. rs551276560[chr1:1004857]
Enhancers that have rs551276560[chr1:1004857]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 992241 1006235 enh11407
Bone Marrow (K562) Prostate (PC-3) Cervix (HeLa-S3) Prostate (RWPE1) Astrocyte Bone (Osteoblast) Placenta Colon (HCT116) Pancreas Thymus
chr1 1004646 1004986 vista15
VISTA
Transcript factors that have rs551276560[chr1:1004857]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 1002785 1007204 TCF7L2 GTRD no Colon (HCT116) 107801768
chr1 1002785 1007204 TCF7L2 GTRD no Colon (HCT116) 107801769
chr1 1004849 1004863 GLIS2 JASPAR yes 26179478
chr1 1004849 1004863 GLIS2 JASPAR yes 118213814
chr1 1004849 1004864 ZIC3 JASPAR yes 26179479
chr1 1004849 1004864 ZIC4 JASPAR yes 26179480
chr1 1004849 1004864 ZIC3 JASPAR yes 118213815
chr1 1004849 1004864 ZIC4 JASPAR yes 118213816
Genes associated with rs551276560[chr1:1004857], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More