EnhancerDB
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  3. rs552045960[chr4:88876485]
Enhancers that have rs552045960[chr4:88876485]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr4 88874636 88879153 enh71283
Neural Stem Cells (H9)
Transcript factors that have rs552045960[chr4:88876485]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr4 88876478 88876486 HOXA5 JASPAR yes 91145075
chr4 88876479 88876489 EMX1 JASPAR yes 91145076
chr4 88876479 88876489 EMX2 JASPAR yes 91145077
chr4 88876479 88876489 GBX2 JASPAR yes 91145078
chr4 88876479 88876489 HOXB2 JASPAR yes 91145079
chr4 88876479 88876489 HOXB3 JASPAR yes 91145080
chr4 88876479 88876489 LHX6 JASPAR yes 91145081
chr4 88876479 88876489 MEOX1 JASPAR yes 91145082
chr4 88876479 88876489 MEOX2 JASPAR yes 91145083
chr4 88876479 88876489 MNX1 JASPAR yes 91145084
chr4 88876479 88876489 POU6F1 JASPAR yes 91145085
chr4 88876480 88876488 LMX1A JASPAR yes 91145086
chr4 88876480 88876488 LMX1B JASPAR yes 91145087
chr4 88876480 88876488 NKX6-1 JASPAR yes 91145088
chr4 88876480 88876488 NKX6-2 JASPAR yes 91145089
chr4 88876480 88876488 PDX1 JASPAR yes 91145090
chr4 88876480 88876488 VAX1 JASPAR yes 91145091
chr4 88876480 88876488 VAX2 JASPAR yes 91145092
chr4 88876480 88876488 VSX1 JASPAR yes 91145093
chr4 88876481 88876492 PHOX2A JASPAR yes 91145094
chr4 88876481 88876492 PROP1 JASPAR yes 91145095
chr4 88876485 88876492 NKX3-1 JASPAR yes 91145096
Genes associated with rs552045960[chr4:88876485], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More