EnhancerDB
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  3. rs552053938[chr19:1862832]
Enhancers that have rs552053938[chr19:1862832]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 1850045 1876795 enh4955
Bone Marrow (K562) Liver (HepG2) Cervix (HeLa-S3) Brain (SK-N-SH) Large Intestine Prostate (RWPE1) Blood (T-cell) Bone (Osteoblast) Blood (GM12878) Placenta Blood (Karpas-422) Pancreas Uterus Thymus
Transcript factors that have rs552053938[chr19:1862832]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 1850548 1866188 TCF7L2 GTRD no Colon (HCT116) 108355215
chr19 1850548 1866188 TCF7L2 GTRD no Colon (HCT116) 108355216
chr19 1850548 1866188 TCF7L2 GTRD no Colon (HCT116) 108355217
chr19 1851001 1866019 ZNF274 GTRD no Bone Marrow (K562) 21832698
chr19 1851001 1866019 ZNF274 GTRD no Bone Marrow (K562) 108355222
chr19 1851001 1866019 ZNF274 GTRD no Bone Marrow (K562) 108355223
chr19 1851001 1866019 ZNF274 GTRD no Bone Marrow (K562) 108355224
chr19 1861248 1866152 ZNF274 GTRD no Blood (GM12878) 21833026
chr19 1862560 1865970 ZNF274 GTRD no Blood (GM12878) 21833027
chr19 1862820 1862833 TFAP2A JASPAR yes 112033918
chr19 1862820 1862833 TFAP2B JASPAR yes 112033919
chr19 1862820 1862833 TFAP2C JASPAR yes 112033920
chr19 1862828 1862833 SP1 TRANSFAC yes 112033921
Genes associated with rs552053938[chr19:1862832], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More