EnhancerDB
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  3. rs552239948[chr1:42228179]
Enhancers that have rs552239948[chr1:42228179]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 42213671 42252455 enh291
Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Blood (T-cell) Epithelial (MCF-7) Stomach Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Thymus Prostate (PC-3) Esophagus Blood (GM12878) Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs552239948[chr1:42228179]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 42228169 42228179 TBR1 JASPAR yes 28419122
chr1 42228169 42228180 TBX2 JASPAR yes 28419123
chr1 42228171 42228179 MGA JASPAR yes 28419125
chr1 42228171 42228179 TBX15 JASPAR yes 28419126
chr1 42228171 42228179 TBX1 JASPAR yes 28419127
chr1 42228171 42228179 TBX4 JASPAR yes 28419128
chr1 42228171 42228179 TBX5 JASPAR yes 28419129
chr1 42228172 42228182 FIGLA JASPAR yes 28419130
chr1 42228172 42228182 ID4 JASPAR yes 28419131
chr1 42228172 42228182 MSC JASPAR yes 28419132
chr1 42228172 42228182 MYF6 JASPAR yes 28419133
chr1 42228172 42228182 TCF3 JASPAR yes 28419134
chr1 42228172 42228182 TCF4 JASPAR yes 28419135
chr1 42228173 42228182 SNAI2 JASPAR yes 28419136
chr1 42228174 42228179 USF2 TRANSFAC yes 28419137
Genes associated with rs552239948[chr1:42228179], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More