EnhancerDB
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  3. rs552248716[chr1:5828002]
Enhancers that have rs552248716[chr1:5828002]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 5825200 5830323 enh66833
Neural Stem Cells (H9) Embryonic Stem Cell Line (H1-hESC)
Transcript factors that have rs552248716[chr1:5828002]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 5827995 5828004 THAP1 JASPAR yes 26369992
chr1 5827999 5828007 TBX5 JASPAR yes 26369993
chr1 5827999 5828008 ZEB1 JASPAR yes 26369994
chr1 5827999 5828011 PKNOX1 JASPAR yes 26369995
chr1 5827999 5828011 PKNOX2 JASPAR yes 26369996
chr1 5828000 5828010 ID4 JASPAR yes 26369997
chr1 5828000 5828010 NHLH1 JASPAR yes 26369998
chr1 5828000 5828010 TCF3 JASPAR yes 26369999
chr1 5828000 5828010 TCF4 JASPAR yes 26370000
chr1 5828001 5828010 SNAI2 JASPAR yes 26370001
chr1 5828002 5828007 USF2 TRANSFAC yes 26370002
Genes associated with rs552248716[chr1:5828002], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More