EnhancerDB
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  3. rs552344994[chr1:117046309]
Enhancers that have rs552344994[chr1:117046309]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 117004485 117055235 enh585
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Lung (A549) Peripheral Blood (MM.1S) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs552344994[chr1:117046309]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 117046113 117046709 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21333188
chr1 117046113 117046709 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107824358
chr1 117046199 117046443 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21333189
chr1 117046199 117046443 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107824359
chr1 117046306 117046312 ZNF354C JASPAR yes 31814830
chr1 117046308 117046318 ZNF740 JASPAR yes 31814831
chr1 117046309 117046319 GCM2 JASPAR yes 31814832
chr1 117046309 117046580 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21333190
chr1 117046309 117046580 RUNX3 UCSC Txn Factor no Conserved 107824360
chr1 117046309 117046580 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107824361
Genes associated with rs552344994[chr1:117046309], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More