EnhancerDB
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  3. rs553080223[chr1:232107874]
Enhancers that have rs553080223[chr1:232107874]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 232100855 232112335 enh43185
Brain (SK-N-SH) Brain (SK-N-MC) Large Intestine Muscle (Myoblast) Muscle (Myotube) Neural Stem Cells (H9) Blood (T-cell)
Transcript factors that have rs553080223[chr1:232107874]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 232107865 232107875 GSX2 JASPAR yes 36128942
chr1 232107865 232107875 HESX1 JASPAR yes 36128943
chr1 232107865 232107875 LBX2 JASPAR yes 36128944
chr1 232107865 232107875 MIXL1 JASPAR yes 36128945
chr1 232107865 232107875 MNX1 JASPAR yes 36128946
chr1 232107865 232107875 RAX JASPAR yes 36128947
chr1 232107866 232107874 ISX JASPAR yes 36128948
chr1 232107866 232107874 LHX9 JASPAR yes 36128949
chr1 232107866 232107874 LMX1B JASPAR yes 36128950
chr1 232107866 232107874 PRRX1 JASPAR yes 36128951
chr1 232107866 232107874 RAX2 JASPAR yes 36128952
chr1 232107866 232107874 SHOX JASPAR yes 36128953
chr1 232107866 232107874 UNCX JASPAR yes 36128954
chr1 232107874 232107878 NFE TRANSFAC yes 36128955
chr1 232107874 232107887 SMAD2 JASPAR yes 36128956
Genes associated with rs553080223[chr1:232107874], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More