EnhancerDB
  1. Home
  2. SNP
  3. rs553554380[chr1:90338238]
Enhancers that have rs553554380[chr1:90338238]
Back to top
Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 90326658 90341655 enh483
Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Brain (SK-N-MC) Large Intestine Blood (T-cell) Liver Astrocyte Lung (PC-9) Blood (OCI-LY7) Muscle (A673) Colon (HCT116) Blood (Karpas-422) Muscle (Myoblast) Pancreas Spleen Thymus Heart
Transcript factors that have rs553554380[chr1:90338238]
Back to top
Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 90338230 90338244 POU4F1 JASPAR yes 30627994
chr1 90338230 90338246 POU4F2 JASPAR yes 30627995
chr1 90338230 90338246 POU4F3 JASPAR yes 30627996
chr1 90338234 90338241 NKX3-1 JASPAR yes 30627997
Genes associated with rs553554380[chr1:90338238], comfirmed by eQTL
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More