EnhancerDB
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  3. rs553950628[chr1:165820164]
Enhancers that have rs553950628[chr1:165820164]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 165800587 165834795 enh699
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Bone (Osteoblast) Lung (A549) Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs553950628[chr1:165820164]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 165820152 165820167 HNF4A JASPAR yes 32803433
chr1 165820153 165820167 NR2F1 JASPAR yes 32803434
chr1 165820153 165820168 HNF4G JASPAR yes 32803435
chr1 165820158 165820179 IRF1 JASPAR yes 32803436
chr1 165820159 165820180 IRF1 JASPAR yes 32803437
chr1 165820161 165820182 IRF1 JASPAR yes 32803438
chr1 165820162 165820183 IRF1 JASPAR yes 32803439
chr1 165820163 165820178 FOXP1 JASPAR yes 32803440
chr1 165820163 165820184 IRF1 JASPAR yes 32803441
chr1 165820164 165820179 FOXP1 JASPAR yes 32803442
chr1 165820164 165820185 IRF1 JASPAR yes 32803443
Genes associated with rs553950628[chr1:165820164], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More