EnhancerDB
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  3. rs553988552[chr1:200254233]
Enhancers that have rs553988552[chr1:200254233]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 200249825 200279179 enh867
Prostate (PC-3) Liver (HepG2) Blood (OCI-LY7) Blood (GM12878) Stomach Placenta Peripheral Blood (MM.1S) Blood (Karpas-422) Lung (PC-9) Pancreas Pancreas (Panc1) Epithelial (MCF-7)
Transcript factors that have rs553988552[chr1:200254233]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 200253457 200254359 ZNF143 GTRD no Epithelial (MCF-7) 21362706
chr1 200253459 200255000 ZNF274 GTRD no Blood (GM12878) 21362707
chr1 200253582 200254861 ZNF274 GTRD no Blood (GM12878) 21362708
chr1 200253596 200255018 ZNF274 GTRD no Blood (GM12878) 21362709
chr1 200253597 200254371 ZNF143 GTRD no Epithelial (MCF-7) 21362710
chr1 200253599 200255148 ZNF274 GTRD no Blood (GM12878) 21362711
chr1 200253645 200254942 ZNF274 GTRD no Blood (GM12878) 21362712
chr1 200253657 200255003 ZNF274 GTRD no Blood (GM12878) 21362713
chr1 200253703 200254473 ZNF274 GTRD no Blood (GM12878) 21362714
chr1 200253710 200254992 ZNF274 GTRD no Blood (GM12878) 21362715
chr1 200253717 200254343 ZNF274 GTRD no Blood (GM12878) 21362716
chr1 200253735 200254602 ZNF274 GTRD no Blood (GM12878) 21362717
chr1 200253755 200254311 ZNF143 GTRD no Epithelial (MCF-7) 21362718
chr1 200253766 200254782 ZNF274 GTRD no Blood (GM12878) 21362719
chr1 200253774 200254902 ZNF274 GTRD no Blood (GM12878) 21362720
chr1 200253787 200254957 ZNF274 GTRD no Blood (GM12878) 21362721
chr1 200253801 200254918 ZNF274 GTRD no Blood (GM12878) 21362722
chr1 200253803 200254618 ZNF274 GTRD no Blood (GM12878) 21362723
chr1 200253878 200254560 ZNF274 GTRD no Blood (GM12878) 21362726
chr1 200253890 200254831 ZNF274 GTRD no Blood (GM12878) 21362727
chr1 200253897 200254561 ZNF274 GTRD no Blood (GM12878) 21362728
chr1 200253905 200254434 ZNF274 GTRD no Blood (GM12878) 21362729
chr1 200253907 200254658 ZNF274 GTRD no Blood (GM12878) 21362730
chr1 200253909 200254530 ZNF274 GTRD no Blood (GM12878) 21362731
chr1 200253913 200255020 ZNF274 GTRD no Blood (GM12878) 21362732
chr1 200253924 200254900 ZNF274 GTRD no Blood (GM12878) 21362733
chr1 200253933 200254767 ZNF274 GTRD no Blood (GM12878) 21362734
chr1 200253938 200254504 ZNF274 GTRD no Blood (GM12878) 21362735
chr1 200253941 200254633 ZNF274 GTRD no Blood (GM12878) 21362736
chr1 200253943 200254487 ZNF274 GTRD no Blood (GM12878) 21362737
chr1 200253949 200254414 ZNF274 GTRD no Blood (GM12878) 21362738
chr1 200253958 200254672 ZNF274 GTRD no Blood (GM12878) 21362739
chr1 200253981 200254444 ZNF274 GTRD no Blood (GM12878) 21362740
chr1 200253985 200254626 ZNF274 GTRD no Blood (GM12878) 21362741
chr1 200253993 200254588 ZNF274 GTRD no Blood (GM12878) 21362742
chr1 200254042 200254508 ZNF274 GTRD no Blood (GM12878) 21362743
chr1 200254043 200254450 ZNF274 GTRD no Blood (GM12878) 21362744
chr1 200254055 200254508 ZNF274 GTRD no Blood (GM12878) 21362745
chr1 200254094 200254536 ZNF274 GTRD no Blood (GM12878) 21362746
chr1 200254107 200254642 ZNF274 GTRD no Blood (GM12878) 21362747
chr1 200254229 200254239 ID4 JASPAR yes 34428873
chr1 200254229 200254239 TCF3 JASPAR yes 34428874
chr1 200254229 200254239 TCF4 JASPAR yes 34428875
chr1 200254231 200254240 ZEB1 JASPAR yes 34428876
Genes associated with rs553988552[chr1:200254233], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More