EnhancerDB
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  3. rs554008623[chr1:172500461]
Enhancers that have rs554008623[chr1:172500461]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 172500351 172500710 vista3893
VISTA
Transcript factors that have rs554008623[chr1:172500461]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 172499174 172500664 ZNF143 GTRD no Epithelial (MCF-7) 107845815
chr1 172499174 172500664 ZNF143 GTRD no Epithelial (MCF-7) 107845816
chr1 172499207 172500884 ZNF143 GTRD no Epithelial (MCF-7) 107845817
chr1 172499207 172500884 ZNF143 GTRD no Epithelial (MCF-7) 107845818
chr1 172499219 172500557 TCF7L2 GTRD no Colon (HCT116) 107845819
chr1 172499219 172500557 TCF7L2 GTRD no Colon (HCT116) 107845820
chr1 172499352 172500588 ZNF143 GTRD no Epithelial (MCF-7) 107845829
chr1 172499352 172500588 ZNF143 GTRD no Epithelial (MCF-7) 107845830
chr1 172499358 172500509 TCF7L2 GTRD no Colon (HCT116) 107845831
chr1 172499358 172500509 TCF7L2 GTRD no Colon (HCT116) 107845832
chr1 172499409 172500599 ZNF274 GTRD no Bone Marrow (K562) 107845840
chr1 172499409 172500599 ZNF274 GTRD no Bone Marrow (K562) 107845841
chr1 172499413 172500645 ZNF143 GTRD no Epithelial (MCF-7) 107845842
chr1 172499413 172500645 ZNF143 GTRD no Epithelial (MCF-7) 107845843
chr1 172499476 172500546 ZNF274 GTRD no Bone Marrow (K562) 107845844
chr1 172499482 172500665 ZNF143 GTRD no Epithelial (MCF-7) 107845845
chr1 172499539 172500656 ZNF274 GTRD no Bone Marrow (K562) 107845846
chr1 172499572 172500504 ZNF143 GTRD no Epithelial (MCF-7) 107845849
chr1 172500295 172500616 ZNF274 GTRD no Blood (GM12878) 107845851
chr1 172500461 172500482 ZNF263 JASPAR yes 118399120
Genes associated with rs554008623[chr1:172500461], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More