EnhancerDB
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  3. rs554380275[chr1:42154649]
Enhancers that have rs554380275[chr1:42154649]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 42121525 42155124 enh11793
Astrocyte Colon (HCT116) Pancreas Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Thymus Prostate (PC-3) Cervix (HeLa-S3) Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs554380275[chr1:42154649]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 42154648 42154665 RXRA JASPAR yes 28410485
Genes associated with rs554380275[chr1:42154649], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More