EnhancerDB
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  3. rs554398293[chr1:178582563]
Enhancers that have rs554398293[chr1:178582563]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 178572424 178586155 enh756
Prostate (PC-3) Cervix (HeLa-S3) Prostate (RWPE1) Esophagus Bone (Osteoblast) Blood (OCI-LY7) Blood (GM12878) Peripheral Blood (MM.1S) Blood (Karpas-422) Lung (PC-9) Muscle (Myoblast) Spleen Muscle (Myotube) Neural Stem Cells (H9) Thymus
Transcript factors that have rs554398293[chr1:178582563]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 178579047 178582842 STAT3 GTRD no Blood (OCI-LY7) 21352682
chr1 178582548 178582812 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21352738
chr1 178582557 178582567 HOXA13 JASPAR yes 33428579
chr1 178582557 178582567 HOXB13 JASPAR yes 33428580
chr1 178582557 178582567 HOXD13 JASPAR yes 33428581
chr1 178582557 178582568 HOXA10 JASPAR yes 33428582
chr1 178582558 178582567 CDX1 JASPAR yes 33428583
chr1 178582558 178582569 CDX2 JASPAR yes 33428584
Genes associated with rs554398293[chr1:178582563], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More