EnhancerDB
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  3. rs554739599[chr1:40850728]
Enhancers that have rs554739599[chr1:40850728]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 40843025 40858135 enh273
Prostate (PC-3) Liver (HepG2) Brain (SK-N-SH) Brain (SK-N-MC) Blood (T-cell) Astrocyte Bone (Osteoblast) Blood (OCI-LY7) Blood (GM12878) Muscle (A673) Placenta Thyroid Peripheral Blood (MM.1S) Blood (Karpas-422) Muscle (Myoblast) Pancreas Pancreas (Panc1) Uterus Thymus Heart
Transcript factors that have rs554739599[chr1:40850728]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 40848589 40852477 POLR2A UCSC Txn Factor no Conserved 107802923
chr1 40850720 40850731 NFKB1 JASPAR yes 28327104
chr1 40850721 40850731 NFKB1 JASPAR yes 28327105
chr1 40850721 40850731 RELA JASPAR yes 28327106
chr1 40850721 40850731 REL JASPAR yes 28327107
chr1 40850725 40850736 EBF1 JASPAR yes 28327108
Genes associated with rs554739599[chr1:40850728], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More