EnhancerDB
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  3. rs554900289[chr1:116849634]
Enhancers that have rs554900289[chr1:116849634]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 116846225 116879811 enh580
Bone Marrow (K562) Brain (SK-N-MC) Liver Blood (Karpas-422) Pancreas Blood (T-cell) Stomach Epithelial (MCF-7) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673)
Transcript factors that have rs554900289[chr1:116849634]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 116849503 116849793 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21331945
chr1 116849513 116849793 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21331946
chr1 116849515 116849815 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21331947
chr1 116849517 116849777 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21331948
chr1 116849622 116849635 NR2F1 JASPAR yes 31792191
chr1 116849626 116849636 RORA JASPAR yes 31792192
chr1 116849626 116849643 RARA JASPAR yes 31792193
chr1 116849626 116849643 RXRA JASPAR yes 31792194
chr1 116849633 116849646 NR2F1 JASPAR yes 31792195
Genes associated with rs554900289[chr1:116849634], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More