EnhancerDB
  1. Home
  2. SNP
  3. rs554953916[chr1:200309340]
Enhancers that have rs554953916[chr1:200309340]
Back to top
Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 200297972 200315295 enh868
Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Brain (SK-N-MC) Prostate (RWPE1) Astrocyte Placenta Colon (HCT116) Peripheral Blood (MM.1S) Blood (Karpas-422) Lung (PC-9) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Epithelial (MCF-7)
Transcript factors that have rs554953916[chr1:200309340]
Back to top
Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 200309337 200309346 HIC2 JASPAR yes 34436789
chr1 200309340 200309344 LFA1 TRANSFAC yes 34436790
Genes associated with rs554953916[chr1:200309340], comfirmed by eQTL
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More