EnhancerDB
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  3. rs556255188[chr1:116871796]
Enhancers that have rs556255188[chr1:116871796]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 116846225 116879811 enh580
Bone Marrow (K562) Brain (SK-N-MC) Liver Blood (Karpas-422) Pancreas Blood (T-cell) Stomach Epithelial (MCF-7) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673)
Transcript factors that have rs556255188[chr1:116871796]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 116871603 116871967 ZNF143 GTRD no Epithelial (MCF-7) 21332175
chr1 116871701 116872355 ZNF274 GTRD no Bone Marrow (K562) 21332176
chr1 116871707 116872396 ZNF274 GTRD no Bone Marrow (K562) 21332177
chr1 116871771 116872255 ZNF143 GTRD no Epithelial (MCF-7) 21332178
chr1 116871771 116872303 ZNF274 GTRD no Cervix (HeLa-S3) 21332179
chr1 116871784 116871799 HNF4G JASPAR yes 31795621
chr1 116871785 116871799 NR2F1 JASPAR yes 31795622
chr1 116871785 116871799 RXRB JASPAR yes 31795623
chr1 116871785 116871799 RXRG JASPAR yes 31795624
chr1 116871785 116871800 HNF4A JASPAR yes 31795625
chr1 116871795 116871816 REST JASPAR yes 31795626
Genes associated with rs556255188[chr1:116871796], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More