EnhancerDB
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  3. rs556879664[chr1:116855019]
Enhancers that have rs556879664[chr1:116855019]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 116846225 116879811 enh580
Bone Marrow (K562) Brain (SK-N-MC) Liver Blood (Karpas-422) Pancreas Blood (T-cell) Stomach Epithelial (MCF-7) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673)
Transcript factors that have rs556879664[chr1:116855019]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 116852222 116855719 ZNF143 GTRD no Epithelial (MCF-7) 21331958
chr1 116852458 116856181 ZNF274 GTRD no Cervix (HeLa-S3) 21331960
chr1 116852657 116856456 ZNF143 GTRD no Epithelial (MCF-7) 21331961
chr1 116852789 116856632 ZNF143 GTRD no Epithelial (MCF-7) 21331966
chr1 116853706 116856589 ZNF143 GTRD no Epithelial (MCF-7) 21332039
chr1 116854405 116855061 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21332058
chr1 116854489 116855059 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21332060
chr1 116854696 116855266 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21332061
chr1 116854874 116855314 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21332062
chr1 116854887 116855187 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21332063
chr1 116854891 116855227 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21332064
chr1 116854896 116855186 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21332065
chr1 116854897 116855967 ZNF274 GTRD no Bone Marrow (K562) 21332066
chr1 116854900 116855180 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21332067
chr1 116854933 116855273 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21332068
chr1 116854956 116855216 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21332069
chr1 116855012 116855023 TFAP2A JASPAR yes 31792980
chr1 116855012 116855023 TFAP2B JASPAR yes 31792981
chr1 116855012 116855023 TFAP2C JASPAR yes 31792982
chr1 116855012 116855597 ZNF143 GTRD no Epithelial (MCF-7) 21332070
chr1 116855013 116855022 TFAP2A JASPAR yes 31792983
chr1 116855018 116855022 LFA1 TRANSFAC yes 31792984
Genes associated with rs556879664[chr1:116855019], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More