EnhancerDB
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  3. rs556889899[chr12:109001556]
Enhancers that have rs556889899[chr12:109001556]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 108997229 109015819 enh14971
Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (T-cell) Stomach Epithelial (MCF-7) Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Esophagus Blood (GM12878) Placenta Lung (PC-9) Spleen Muscle (Myotube) Prostate (RWPE1) Muscle (A673)
Transcript factors that have rs556889899[chr12:109001556]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 109001542 109001560 ESR2 JASPAR yes 123605974
chr12 109001553 109001568 TFAP2C JASPAR yes 123605975
chr12 109001554 109001565 TFAP2A JASPAR yes 123605976
chr12 109001554 109001565 TFAP2B JASPAR yes 123605977
chr12 109001554 109001565 TFAP2C JASPAR yes 123605978
chr12 109001554 109001567 TFAP2A JASPAR yes 123605979
chr12 109001554 109001567 TFAP2B JASPAR yes 123605980
chr12 109001554 109001567 TFAP2C JASPAR yes 123605981
chr12 109001555 109001564 TFAP2A JASPAR yes 123605982
Genes associated with rs556889899[chr12:109001556], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More