EnhancerDB
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  3. rs557055409[chr1:200406545]
Enhancers that have rs557055409[chr1:200406545]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 200395745 200424875 enh27417
Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Astrocyte Peripheral Blood (MM.1S) Lung (PC-9) Neural Stem Cells (H9) Thymus Epithelial (MCF-7)
Transcript factors that have rs557055409[chr1:200406545]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 200403827 200409116 AR GTRD no Prostate (PC-3) 21363470
chr1 200406295 200406753 ZNF274 GTRD no Cervix (HeLa-S3) 21363479
chr1 200406310 200406574 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21363480
chr1 200406540 200406555 MEF2C JASPAR yes 34447051
chr1 200406543 200406558 FOXP1 JASPAR yes 34447052
chr1 200406544 200406559 FOXP1 JASPAR yes 34447053
chr1 200406544 200406565 IRF1 JASPAR yes 34447054
chr1 200406545 200406560 FOXP1 JASPAR yes 34447055
chr1 200406545 200406566 IRF1 JASPAR yes 34447056
Genes associated with rs557055409[chr1:200406545], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More