EnhancerDB
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  3. rs557872001[chr1:200422944]
Enhancers that have rs557872001[chr1:200422944]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 200395745 200424875 enh27417
Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Astrocyte Peripheral Blood (MM.1S) Lung (PC-9) Neural Stem Cells (H9) Thymus Epithelial (MCF-7)
Transcript factors that have rs557872001[chr1:200422944]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 200422486 200423527 ZNF143 GTRD no Epithelial (MCF-7) 21363587
chr1 200422652 200423048 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21363589
chr1 200422656 200423026 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21363590
chr1 200422682 200423012 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21363591
chr1 200422689 200423073 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21363592
chr1 200422713 200423033 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21363593
chr1 200422735 200422950 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21363594
chr1 200422938 200422959 IRF1 JASPAR yes 34449943
chr1 200422940 200422955 FOXP1 JASPAR yes 34449944
chr1 200422940 200422961 IRF1 JASPAR yes 34449945
chr1 200422941 200422956 FOXP1 JASPAR yes 34449946
chr1 200422942 200422948 TBP TRANSFAC yes 34449947
chr1 200422943 200422958 FOXP1 JASPAR yes 34449948
chr1 200422944 200422965 IRF1 JASPAR yes 34449949
Genes associated with rs557872001[chr1:200422944], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More