EnhancerDB
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Enhancers that have rs558403309[chr17:60252015]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 60237265 60252315 enh17274
Bone Marrow (K562) Prostate (PC-3) Cervix (HeLa-S3) Prostate (RWPE1) Large Intestine Stomach Placenta Colon (HCT116) Peripheral Blood (MM.1S) Lung (PC-9) Epithelial (MCF-7)
Transcript factors that have rs558403309[chr17:60252015]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 60247648 60257176 ZNF143 GTRD no Epithelial (MCF-7) 21777818
chr17 60247648 60257176 ZNF143 GTRD no Epithelial (MCF-7) 21777819
chr17 60247648 60257176 ZNF143 GTRD no Epithelial (MCF-7) 108280259
chr17 60247648 60257176 ZNF143 GTRD no Epithelial (MCF-7) 108280260
chr17 60247648 60257176 ZNF143 GTRD no Epithelial (MCF-7) 108280261
chr17 60247648 60257176 ZNF143 GTRD no Epithelial (MCF-7) 108280262
chr17 60247648 60257176 ZNF143 GTRD no Epithelial (MCF-7) 108280263
chr17 60249603 60253517 ZNF143 GTRD no Epithelial (MCF-7) 21777859
chr17 60249603 60253517 ZNF143 GTRD no Epithelial (MCF-7) 108280323
chr17 60250994 60255066 ZNF143 GTRD no Epithelial (MCF-7) 21777896
chr17 60250994 60255066 ZNF143 GTRD no Epithelial (MCF-7) 21777897
chr17 60252009 60252030 IRF1 JASPAR yes 55189791
chr17 60252010 60252031 IRF1 JASPAR yes 55189792
chr17 60252011 60252032 IRF1 JASPAR yes 55189793
chr17 60252012 60252033 IRF1 JASPAR yes 55189794
chr17 60252013 60252028 FOXP1 JASPAR yes 55189795
chr17 60252013 60252034 IRF1 JASPAR yes 55189796
chr17 60252014 60252029 FOXP1 JASPAR yes 55189797
chr17 60252014 60252035 IRF1 JASPAR yes 55189798
chr17 60252015 60252030 FOXP1 JASPAR yes 55189799
chr17 60252015 60252036 IRF1 JASPAR yes 55189800
Genes associated with rs558403309[chr17:60252015], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More