EnhancerDB
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  3. rs55842188[chr1:42148880]
Enhancers that have rs55842188[chr1:42148880]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 42121525 42155124 enh11793
Astrocyte Colon (HCT116) Pancreas Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Thymus Prostate (PC-3) Cervix (HeLa-S3) Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs55842188[chr1:42148880]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 42148876 42148890 STAT1 JASPAR yes 28409688
chr1 42148876 42148891 STAT2 JASPAR yes 28409689
chr1 42148877 42148891 TCF7L2 JASPAR yes 28409690
Genes associated with rs55842188[chr1:42148880], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More