EnhancerDB
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  3. rs55856340[chr1:116846982]
Enhancers that have rs55856340[chr1:116846982]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 116846225 116879811 enh580
Bone Marrow (K562) Brain (SK-N-MC) Liver Blood (Karpas-422) Pancreas Blood (T-cell) Stomach Epithelial (MCF-7) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673)
Transcript factors that have rs55856340[chr1:116846982]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 116845318 116847005 ZNF274 GTRD no Bone Marrow (K562) 21331885
chr1 116845820 116847381 ZNF274 GTRD no Bone Marrow (K562) 21331899
chr1 116846913 116847707 ZNF274 GTRD no Bone Marrow (K562) 21331921
chr1 116846970 116846984 TCF7L2 JASPAR yes 31791650
Genes associated with rs55856340[chr1:116846982], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More