EnhancerDB
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  3. rs55938797[chr1:116855560]
Enhancers that have rs55938797[chr1:116855560]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 116846225 116879811 enh580
Bone Marrow (K562) Brain (SK-N-MC) Liver Blood (Karpas-422) Pancreas Blood (T-cell) Stomach Epithelial (MCF-7) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673)
Transcript factors that have rs55938797[chr1:116855560]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 116852222 116855719 ZNF143 GTRD no Epithelial (MCF-7) 21331958
chr1 116852458 116856181 ZNF274 GTRD no Cervix (HeLa-S3) 21331960
chr1 116852657 116856456 ZNF143 GTRD no Epithelial (MCF-7) 21331961
chr1 116852789 116856632 ZNF143 GTRD no Epithelial (MCF-7) 21331966
chr1 116853706 116856589 ZNF143 GTRD no Epithelial (MCF-7) 21332039
chr1 116854897 116855967 ZNF274 GTRD no Bone Marrow (K562) 21332066
chr1 116855012 116855597 ZNF143 GTRD no Epithelial (MCF-7) 21332070
chr1 116855027 116855621 ZNF143 GTRD no Epithelial (MCF-7) 21332071
chr1 116855544 116855562 SRF JASPAR yes 31793044
Genes associated with rs55938797[chr1:116855560], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More