EnhancerDB
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  3. rs559605920[chr1:42124212]
Enhancers that have rs559605920[chr1:42124212]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 42121525 42155124 enh11793
Astrocyte Colon (HCT116) Pancreas Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Thymus Prostate (PC-3) Cervix (HeLa-S3) Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs559605920[chr1:42124212]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 42124208 42124223 TFAP2A JASPAR yes 28406263
chr1 42124208 42124223 TFAP2C JASPAR yes 28406264
chr1 42124210 42124222 TFAP2A JASPAR yes 28406265
chr1 42124212 42124221 TFAP2A JASPAR yes 28406266
Genes associated with rs559605920[chr1:42124212], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More