EnhancerDB
  1. Home
  2. SNP
  3. rs559875037[chr17:6555069]
Enhancers that have rs559875037[chr17:6555069]
Back to top
Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 6552025 6577412 enh4228
Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Prostate (RWPE1) Esophagus Blood (OCI-LY7) Colon (HCT116) Blood (Karpas-422) Lung (PC-9)
Transcript factors that have rs559875037[chr17:6555069]
Back to top
Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 6554346 6556369 ZNF274 GTRD no Cervix (HeLa-S3) 21740838
chr17 6554821 6557197 TCF7L2 GTRD no Colon (HCT116) 21740839
chr17 6554883 6557185 TCF7L2 GTRD no Colon (HCT116) 21740840
chr17 6554954 6557562 TCF7L2 GTRD no Colon (HCT116) 21740841
chr17 6555058 6555069 TFAP2A JASPAR yes 52921972
chr17 6555058 6555069 TFAP2B JASPAR yes 52921973
chr17 6555058 6555069 TFAP2C JASPAR yes 52921974
chr17 6555058 6555071 TFAP2A JASPAR yes 52921975
chr17 6555058 6555071 TFAP2B JASPAR yes 52921976
chr17 6555058 6555071 TFAP2C JASPAR yes 52921977
chr17 6555066 6555070 LFA1 TRANSFAC yes 52921978
Genes associated with rs559875037[chr17:6555069], comfirmed by eQTL
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More