EnhancerDB
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  3. rs55997438[chr1:42235415]
Enhancers that have rs55997438[chr1:42235415]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 42213671 42252455 enh291
Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Blood (T-cell) Epithelial (MCF-7) Stomach Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Thymus Prostate (PC-3) Esophagus Blood (GM12878) Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs55997438[chr1:42235415]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 42235399 42235415 SOX4 JASPAR yes 28420086
chr1 42235411 42235422 HOXD12 JASPAR yes 28420087
chr1 42235413 42235424 BATF JASPAR yes 28420088
chr1 42235414 42235425 JUNB JASPAR yes 28420089
chr1 42235415 42235426 FOS JASPAR yes 28420090
chr1 42235415 42235426 FOSL1 JASPAR yes 28420091
Genes associated with rs55997438[chr1:42235415], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More