EnhancerDB
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  3. rs560080204[chr1:42231517]
Enhancers that have rs560080204[chr1:42231517]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 42213671 42252455 enh291
Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Blood (T-cell) Epithelial (MCF-7) Stomach Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Thymus Prostate (PC-3) Esophagus Blood (GM12878) Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs560080204[chr1:42231517]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 42231513 42231528 TFAP2C JASPAR yes 28419580
chr1 42231514 42231523 THAP1 JASPAR yes 28419581
chr1 42231515 42231527 TFAP2A JASPAR yes 28419582
chr1 42231515 42231527 TFAP2B JASPAR yes 28419583
chr1 42231515 42231527 TFAP2C JASPAR yes 28419584
chr1 42231515 42231530 TFAP2A JASPAR yes 28419585
chr1 42231515 42231530 TFAP2C JASPAR yes 28419586
chr1 42231516 42231527 TFAP2B JASPAR yes 28419587
Genes associated with rs560080204[chr1:42231517], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More