EnhancerDB
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  3. rs560169734[chr1:42128675]
Enhancers that have rs560169734[chr1:42128675]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 42121525 42155124 enh11793
Astrocyte Colon (HCT116) Pancreas Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Thymus Prostate (PC-3) Cervix (HeLa-S3) Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Prostate (RWPE1) Muscle (A673) Heart
chr1 42127851 42128791 vista1340
VISTA
Transcript factors that have rs560169734[chr1:42128675]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 42128668 42128675 SP1 TRANSFAC yes 28406866
chr1 42128668 42128675 SP1 TRANSFAC yes 118279254
chr1 42128668 42128678 SP1 JASPAR yes 28406867
chr1 42128668 42128678 SP1 JASPAR yes 118279255
chr1 42128669 42128677 SP1 TRANSFAC yes 28406868
chr1 42128669 42128677 SP1 TRANSFAC yes 118279256
chr1 42128670 42128675 SP1 TRANSFAC yes 28406869
chr1 42128670 42128675 SP1 TRANSFAC yes 118279257
chr1 42128671 42128676 SP1 TRANSFAC yes 28406870
chr1 42128671 42128676 SP1 TRANSFAC yes 118279258
chr1 42128671 42128677 SP1 TRANSFAC yes 28406871
chr1 42128671 42128677 SP1 TRANSFAC yes 118279259
chr1 42128673 42128686 NFKB1 JASPAR yes 28406872
chr1 42128673 42128686 NFKB2 JASPAR yes 28406873
chr1 42128673 42128686 NFKB1 JASPAR yes 118279260
chr1 42128673 42128686 NFKB2 JASPAR yes 118279261
chr1 42128674 42128687 NFKB1 JASPAR yes 28406874
chr1 42128674 42128687 NFKB2 JASPAR yes 28406875
chr1 42128674 42128687 NFKB1 JASPAR yes 118279262
chr1 42128674 42128687 NFKB2 JASPAR yes 118279263
Genes associated with rs560169734[chr1:42128675], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More