EnhancerDB
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  3. rs560997846[chr5:172190249]
Enhancers that have rs560997846[chr5:172190249]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr5 172182745 172195855 enh8880
Bone Marrow (K562) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Prostate (RWPE1) Esophagus Astrocyte Blood (T-cell) Lung (PC-9) Bone (Osteoblast) Muscle (A673) Placenta Colon (HCT116) Blood (Karpas-422) Muscle (Myoblast) Pancreas Pancreas (Panc1) Muscle (Myotube) Thymus Stomach
Transcript factors that have rs560997846[chr5:172190249]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr5 172190230 172190249 PAX5 JASPAR yes 67823881
chr5 172190242 172190255 TFAP2A JASPAR yes 67823885
chr5 172190242 172190255 TFAP2B JASPAR yes 67823886
chr5 172190242 172190255 TFAP2C JASPAR yes 67823887
chr5 172190243 172190256 TFAP2B JASPAR yes 67823888
chr5 172190243 172190256 TFAP2C JASPAR yes 67823889
Genes associated with rs560997846[chr5:172190249], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More