EnhancerDB
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Enhancers that have rs561939006[chr1:117281729]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 117274325 117283914 enh47231
Brain (SK-N-SH) Blood (T-cell) Esophagus Blood (OCI-LY7) Blood (GM12878) Peripheral Blood (MM.1S) Thymus
chr1 117281390 117281752 vista3079
VISTA
Transcript factors that have rs561939006[chr1:117281729]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 117281240 117281905 ZNF274 GTRD no Bone Marrow (K562) 107824790
chr1 117281263 117281947 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21333716
chr1 117281263 117281947 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107824791
chr1 117281334 117281850 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21333718
chr1 117281334 117281850 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107824793
chr1 117281343 117282003 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21333719
chr1 117281343 117282003 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107824794
chr1 117281345 117281736 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21333720
chr1 117281345 117281736 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107824795
chr1 117281346 117281772 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21333721
chr1 117281346 117281772 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107824796
chr1 117281383 117281787 RELA UCSC Txn Factor no Conserved 107824797
chr1 117281401 117281796 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21333722
chr1 117281401 117281796 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107824798
chr1 117281421 117282011 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21333723
chr1 117281421 117282011 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107824800
chr1 117281433 117281797 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21333724
chr1 117281433 117281797 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107824801
chr1 117281447 117281757 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21333727
chr1 117281447 117281757 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107824804
chr1 117281478 117281758 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21333730
chr1 117281478 117281758 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107824807
chr1 117281487 117281751 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21333731
chr1 117281487 117281751 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107824808
chr1 117281526 117281766 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21333734
chr1 117281526 117281766 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107824811
chr1 117281719 117281733 GATA2 JASPAR yes 31834010
chr1 117281719 117281733 GATA2 JASPAR yes 118357779
chr1 117281721 117281729 GATA5 JASPAR yes 31834012
chr1 117281721 117281729 GATA5 JASPAR yes 118357781
chr1 117281722 117281732 TBR1 JASPAR yes 31834013
chr1 117281722 117281732 TBR1 JASPAR yes 118357782
chr1 117281724 117281732 MGA JASPAR yes 31834015
chr1 117281724 117281732 TBX15 JASPAR yes 31834016
chr1 117281724 117281732 TBX1 JASPAR yes 31834017
chr1 117281724 117281732 TBX4 JASPAR yes 31834018
chr1 117281724 117281732 TBX5 JASPAR yes 31834019
chr1 117281724 117281732 MGA JASPAR yes 118357784
chr1 117281724 117281732 TBX15 JASPAR yes 118357785
chr1 117281724 117281732 TBX1 JASPAR yes 118357786
chr1 117281724 117281732 TBX4 JASPAR yes 118357787
chr1 117281724 117281732 TBX5 JASPAR yes 118357788
chr1 117281724 117281736 PKNOX1 JASPAR yes 31834020
chr1 117281724 117281736 PKNOX2 JASPAR yes 31834021
chr1 117281724 117281736 TGIF2 JASPAR yes 31834022
chr1 117281724 117281736 PKNOX1 JASPAR yes 118357789
chr1 117281724 117281736 PKNOX2 JASPAR yes 118357790
chr1 117281724 117281736 TGIF2 JASPAR yes 118357791
chr1 117281725 117281735 SREBF2 JASPAR yes 31834023
chr1 117281725 117281735 SREBF2 JASPAR yes 118357792
chr1 117281726 117281735 SNAI2 JASPAR yes 31834024
chr1 117281726 117281735 SNAI2 JASPAR yes 118357793
chr1 117281727 117281732 USF2 TRANSFAC yes 31834025
chr1 117281727 117281732 USF2 TRANSFAC yes 118357794
Genes associated with rs561939006[chr1:117281729], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More