EnhancerDB
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  3. rs562205994[chr1:117035176]
Enhancers that have rs562205994[chr1:117035176]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 117004485 117055235 enh585
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Lung (A549) Peripheral Blood (MM.1S) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs562205994[chr1:117035176]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 117034508 117035477 ZNF143 GTRD no Epithelial (MCF-7) 21333054
chr1 117034672 117035302 ZNF143 GTRD no Epithelial (MCF-7) 21333056
chr1 117034778 117035228 ZNF143 GTRD no Epithelial (MCF-7) 21333058
chr1 117035170 117035185 NFYB JASPAR yes 31813346
chr1 117035171 117035535 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21333061
chr1 117035172 117035188 NFYA JASPAR yes 31813347
chr1 117035173 117035191 NFYA JASPAR yes 31813348
chr1 117035174 117035186 PBX1 JASPAR yes 31813349
chr1 117035174 117035194 RREB1 JASPAR yes 31813350
Genes associated with rs562205994[chr1:117035176], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More