EnhancerDB
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  3. rs56250340[chr12:47346971]
Enhancers that have rs56250340[chr12:47346971]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 47334386 47348895 enh29554
Skin (Keratinocyte) Prostate (PC-3) Brain (SK-N-MC) Astrocyte Muscle (A673) Peripheral Blood (MM.1S) Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Epithelial (MCF-7)
Transcript factors that have rs56250340[chr12:47346971]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 47346407 47347179 ZNF143 GTRD no Epithelial (MCF-7) 21542908
chr12 47346528 47347039 ZNF143 GTRD no Epithelial (MCF-7) 21542909
chr12 47346681 47347148 ZNF143 GTRD no Epithelial (MCF-7) 21542911
chr12 47346964 47346979 FOXP1 JASPAR yes 120662591
chr12 47346966 47346981 MEF2C JASPAR yes 120662592
chr12 47346966 47346987 IRF1 JASPAR yes 120662593
chr12 47346967 47346982 MEF2A JASPAR yes 120662594
chr12 47346969 47346984 FOXP1 JASPAR yes 120662595
chr12 47346970 47346976 TBP TRANSFAC yes 120662596
chr12 47346970 47346985 FOXP1 JASPAR yes 120662597
chr12 47346971 47346986 FOXP1 JASPAR yes 120662598
chr12 47346971 47346992 IRF1 JASPAR yes 120662599
Genes associated with rs56250340[chr12:47346971], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More