EnhancerDB
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  3. rs562560025[chr1:40855341]
Enhancers that have rs562560025[chr1:40855341]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 40843025 40858135 enh273
Prostate (PC-3) Liver (HepG2) Brain (SK-N-SH) Brain (SK-N-MC) Blood (T-cell) Astrocyte Bone (Osteoblast) Blood (OCI-LY7) Blood (GM12878) Muscle (A673) Placenta Thyroid Peripheral Blood (MM.1S) Blood (Karpas-422) Muscle (Myoblast) Pancreas Pancreas (Panc1) Uterus Thymus Heart
Transcript factors that have rs562560025[chr1:40855341]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 40855330 40855345 ZIC3 JASPAR yes 28327743
chr1 40855330 40855345 ZIC4 JASPAR yes 28327744
chr1 40855331 40855345 GLIS3 JASPAR yes 28327745
chr1 40855331 40855345 ZIC1 JASPAR yes 28327746
Genes associated with rs562560025[chr1:40855341], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More