EnhancerDB
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  3. rs562727041[chr1:17229236]
Enhancers that have rs562727041[chr1:17229236]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 17219841 17243115 enh90
Cervix (HeLa-S3) Prostate (RWPE1) Blood (T-cell) Bone (Osteoblast) Blood (OCI-LY7) Blood (GM12878) Placenta Colon (HCT116) Peripheral Blood (MM.1S) Blood (Karpas-422) Pancreas (Panc1) Uterus Thymus
Transcript factors that have rs562727041[chr1:17229236]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 17228555 17230938 TCF7L2 GTRD no Colon (HCT116) 107802243
chr1 17229235 17229255 TP63 JASPAR yes 27063824
chr1 17229236 17229254 TP53 JASPAR yes 27063825
chr1 17229236 17229254 TP63 JASPAR yes 27063826
Genes associated with rs562727041[chr1:17229236], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More