EnhancerDB
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  3. rs562829454[chr17:38263339]
Enhancers that have rs562829454[chr17:38263339]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 38259185 38273195 enh4407
Bone Marrow (K562) Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Blood (T-cell) Epithelial (MCF-7) Kidney Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Muscle (Myoblast) Prostate (RWPE1) Lung Muscle (A673) Heart
chr17 38263317 38263642 vista24686
VISTA
Transcript factors that have rs562829454[chr17:38263339]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 38263328 38263349 ZNF263 JASPAR yes 21232588
chr17 38263328 38263349 ZNF263 JASPAR yes 54193326
chr17 38263329 38263339 SP1 JASPAR yes 21232589
chr17 38263329 38263339 SP1 JASPAR yes 54193327
chr17 38263330 38263340 SP1 JASPAR yes 21232591
chr17 38263330 38263340 SP1 JASPAR yes 54193329
chr17 38263331 38263341 MZF1 JASPAR yes 21232592
chr17 38263331 38263341 SP1 JASPAR yes 21232593
chr17 38263331 38263341 ZNF740 JASPAR yes 21232594
chr17 38263331 38263341 MZF1 JASPAR yes 54193330
chr17 38263331 38263341 SP1 JASPAR yes 54193331
chr17 38263331 38263341 ZNF740 JASPAR yes 54193332
chr17 38263331 38263352 ZNF263 JASPAR yes 21232595
chr17 38263331 38263352 ZNF263 JASPAR yes 54193333
chr17 38263332 38263342 ZNF740 JASPAR yes 21232596
chr17 38263332 38263342 ZNF740 JASPAR yes 54193334
chr17 38263334 38263355 ZNF263 JASPAR yes 21232597
chr17 38263334 38263355 ZNF263 JASPAR yes 54193335
chr17 38263336 38263357 ZNF263 JASPAR yes 21232598
chr17 38263336 38263357 ZNF263 JASPAR yes 54193336
chr17 38263337 38263354 RXRA JASPAR yes 21232599
chr17 38263337 38263354 RXRA JASPAR yes 54193337
chr17 38263337 38263358 ZNF263 JASPAR yes 21232600
chr17 38263337 38263358 ZNF263 JASPAR yes 54193338
chr17 38263338 38263342 LFA1 TRANSFAC yes 21232601
chr17 38263338 38263342 LFA1 TRANSFAC yes 54193339
Genes associated with rs562829454[chr17:38263339], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More