EnhancerDB
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  3. rs562947520[chr1:42247316]
Enhancers that have rs562947520[chr1:42247316]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 42213671 42252455 enh291
Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Blood (T-cell) Epithelial (MCF-7) Stomach Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Thymus Prostate (PC-3) Esophagus Blood (GM12878) Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs562947520[chr1:42247316]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 42247307 42247322 SOX21 JASPAR yes 28421909
chr1 42247307 42247323 SOX4 JASPAR yes 28421910
Genes associated with rs562947520[chr1:42247316], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More