EnhancerDB
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  3. rs563189277[chr1:42225038]
Enhancers that have rs563189277[chr1:42225038]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 42213671 42252455 enh291
Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Blood (T-cell) Epithelial (MCF-7) Stomach Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Thymus Prostate (PC-3) Esophagus Blood (GM12878) Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs563189277[chr1:42225038]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 42225031 42225041 HOXA13 JASPAR yes 28418673
chr1 42225031 42225041 HOXB13 JASPAR yes 28418674
chr1 42225031 42225041 HOXD13 JASPAR yes 28418675
chr1 42225031 42225042 HOXA10 JASPAR yes 28418676
chr1 42225031 42225042 HOXD12 JASPAR yes 28418677
chr1 42225032 42225041 CDX1 JASPAR yes 28418678
chr1 42225032 42225043 CDX2 JASPAR yes 28418679
Genes associated with rs563189277[chr1:42225038], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More