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- rs56355925[chr19:1550673]
Enhancers that have rs56355925[chr19:1550673]
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| Chrom. |
Start |
End |
Enhancer ID |
Tissues that enhancer appears |
More |
| chr19 |
1537125 |
1551004 |
enh17842 |
|
|
Transcript factors that have rs56355925[chr19:1550673]
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| Chrom. |
Start |
End |
TF name |
Source |
Predicted site? |
Tissue |
id |
More |
|
chr19
|
1550486
|
1552175
|
TCF7L2
|
GTRD
|
no
|
Colon (HCT116)
|
21832145
|
|
|
chr19
|
1550533
|
1551762
|
TCF7L2
|
GTRD
|
no
|
Colon (HCT116)
|
21832146
|
|
|
chr19
|
1550669
|
1550688
|
REST
|
JASPAR
|
yes
|
|
112017619
|
|
|
chr19
|
1550671
|
1550676
|
SP1
|
TRANSFAC
|
yes
|
|
112017620
|
|
Genes associated with rs56355925[chr19:1550673], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
| Chrom. |
Start |
End |
Strand |
Gene name |
Ensembl ID |
TSS of gene |
Distance between TSS and SNP |
Tissue |
q Value |
id |
More |
|
chr19
|
589893
|
617159
|
+
|
HCN2
|
ENSG00000099822.2
|
589893
|
933514
|
Breast
|
0.370489
|
16708
|
|