EnhancerDB
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  3. rs563939700[chr1:169278354]
Enhancers that have rs563939700[chr1:169278354]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 169275965 169283797 enh27212
Bone Marrow (K562) Skin (Keratinocyte) Prostate (PC-3) Large Intestine Astrocyte Bone (Osteoblast) Lung (PC-9) Muscle (Myoblast) Epithelial (MCF-7)
Transcript factors that have rs563939700[chr1:169278354]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 169278345 169278360 HNF1A JASPAR yes 32997580
chr1 169278346 169278359 HNF1B JASPAR yes 32997581
chr1 169278349 169278359 GSX2 JASPAR yes 32997582
chr1 169278349 169278359 HOXB2 JASPAR yes 32997583
chr1 169278349 169278359 HOXB3 JASPAR yes 32997584
chr1 169278349 169278359 MNX1 JASPAR yes 32997585
chr1 169278349 169278359 POU6F1 JASPAR yes 32997586
chr1 169278349 169278360 HOXA10 JASPAR yes 32997587
chr1 169278349 169278363 POU1F1 JASPAR yes 32997588
chr1 169278350 169278358 LMX1A JASPAR yes 32997589
chr1 169278350 169278358 LMX1B JASPAR yes 32997590
chr1 169278350 169278358 NKX6-1 JASPAR yes 32997591
chr1 169278350 169278358 NKX6-2 JASPAR yes 32997592
chr1 169278350 169278358 VAX1 JASPAR yes 32997593
chr1 169278350 169278358 VAX2 JASPAR yes 32997594
chr1 169278350 169278358 VSX1 JASPAR yes 32997595
chr1 169278350 169278358 VSX2 JASPAR yes 32997596
chr1 169278351 169278362 PHOX2A JASPAR yes 32997597
chr1 169278351 169278362 PROP1 JASPAR yes 32997598
Genes associated with rs563939700[chr1:169278354], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More