EnhancerDB
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  3. rs56407499[chr1:117041717]
Enhancers that have rs56407499[chr1:117041717]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 117004485 117055235 enh585
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Lung (A549) Peripheral Blood (MM.1S) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs56407499[chr1:117041717]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 117041492 117042042 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21333125
chr1 117041575 117042015 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21333126
chr1 117041579 117042035 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21333127
chr1 117041582 117041946 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21333128
chr1 117041595 117041999 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21333129
chr1 117041602 117041978 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21333130
chr1 117041621 117041951 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21333131
chr1 117041632 117042088 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21333132
chr1 117041658 117041934 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21333133
chr1 117041672 117042042 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21333134
chr1 117041674 117041944 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 21333135
chr1 117041676 117041952 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21333136
chr1 117041689 117042009 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21333137
chr1 117041695 117042055 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21333138
chr1 117041696 117041900 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21333139
chr1 117041702 117042032 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21333140
chr1 117041704 117041717 SCRT2 JASPAR yes 31814232
chr1 117041704 117041719 SCRT1 JASPAR yes 31814233
chr1 117041704 117041719 ZIC4 JASPAR yes 31814234
chr1 117041705 117041719 ZIC1 JASPAR yes 31814235
chr1 117041707 117041997 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21333141
chr1 117041712 117041966 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21333142
chr1 117041715 117041985 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21333143
Genes associated with rs56407499[chr1:117041717], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More