EnhancerDB
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  3. rs564257249[chr1:17228532]
Enhancers that have rs564257249[chr1:17228532]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 17219841 17243115 enh90
Cervix (HeLa-S3) Prostate (RWPE1) Blood (T-cell) Bone (Osteoblast) Blood (OCI-LY7) Blood (GM12878) Placenta Colon (HCT116) Peripheral Blood (MM.1S) Blood (Karpas-422) Pancreas (Panc1) Uterus Thymus
Transcript factors that have rs564257249[chr1:17228532]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 17228526 17228536 ALX3 JASPAR yes 27063678
chr1 17228526 17228536 GSX1 JASPAR yes 27063679
chr1 17228526 17228536 GSX2 JASPAR yes 27063680
chr1 17228526 17228536 MIXL1 JASPAR yes 27063681
chr1 17228526 17228536 MNX1 JASPAR yes 27063682
chr1 17228526 17228536 NOTO JASPAR yes 27063683
chr1 17228527 17228535 ISX JASPAR yes 27063684
chr1 17228527 17228535 LMX1A JASPAR yes 27063685
chr1 17228527 17228535 LMX1B JASPAR yes 27063686
chr1 17228527 17228535 NKX6-1 JASPAR yes 27063687
chr1 17228527 17228535 NKX6-2 JASPAR yes 27063688
chr1 17228527 17228535 PRRX1 JASPAR yes 27063689
chr1 17228527 17228535 RAX2 JASPAR yes 27063690
chr1 17228527 17228535 SHOX JASPAR yes 27063691
chr1 17228527 17228535 UNCX JASPAR yes 27063692
chr1 17228527 17228535 VAX1 JASPAR yes 27063693
Genes associated with rs564257249[chr1:17228532], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More