EnhancerDB
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  3. rs568562857[chr1:116923204]
Enhancers that have rs568562857[chr1:116923204]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 116912865 116924675 enh582
Liver (HepG2) Cervix (HeLa-S3) Prostate (RWPE1) Blood (T-cell) Astrocyte Bone (Osteoblast) Blood (GM12878) Placenta Colon (HCT116) Blood (Karpas-422) Pancreas Pancreas (Panc1) Neural Stem Cells (H9) Thymus Heart
Transcript factors that have rs568562857[chr1:116923204]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 116922641 116923713 P63 GTRD no Skin (Keratinocyte) 107824240
chr1 116922655 116924036 P63 GTRD no Skin (Keratinocyte) 107824241
chr1 116922675 116923634 P63 GTRD no Skin (Keratinocyte) 107824242
chr1 116922862 116923616 P63 GTRD no Skin (Keratinocyte) 107824243
chr1 116923161 116923845 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21332428
chr1 116923161 116923845 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107824244
chr1 116923195 116923205 GSX1 JASPAR yes 31802750
chr1 116923195 116923205 GSX2 JASPAR yes 31802751
chr1 116923196 116923204 BSX JASPAR yes 31802752
chr1 116923196 116923206 HOXB13 JASPAR yes 31802753
chr1 116923196 116923206 HOXD13 JASPAR yes 31802754
chr1 116923204 116923218 TLX1 JASPAR yes 31802756
Genes associated with rs568562857[chr1:116923204], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More