EnhancerDB
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  3. rs575493956[chr1:222130385]
Enhancers that have rs575493956[chr1:222130385]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 222129374 222148777 enh27556
Bone Marrow (K562) Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Astrocyte Lung (A549) Colon (HCT116) Peripheral Blood (MM.1S) Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Neural Stem Cells (H9) Epithelial (MCF-7)
Transcript factors that have rs575493956[chr1:222130385]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 222130262 222130860 SOX2 GTRD no Neural Stem Cells (H9) 21383020
chr1 222130276 222130654 SOX2 GTRD no Neural Stem Cells (H9) 21383021
chr1 222130372 222130387 FOXP1 JASPAR yes 35585230
chr1 222130374 222130389 FOXP1 JASPAR yes 35585231
chr1 222130376 222130396 RREB1 JASPAR yes 35585232
chr1 222130384 222130395 DUX4 JASPAR yes 35585233
Genes associated with rs575493956[chr1:222130385], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More