EnhancerDB
  1. Home
  2. SNP
  3. rs5780019[chr1:200299701]
Enhancers that have rs5780019[chr1:200299701]
Back to top
Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 200297972 200315295 enh868
Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Brain (SK-N-MC) Prostate (RWPE1) Astrocyte Placenta Colon (HCT116) Peripheral Blood (MM.1S) Blood (Karpas-422) Lung (PC-9) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Epithelial (MCF-7)
Transcript factors that have rs5780019[chr1:200299701]
Back to top
Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 200299689 200299707 IRF2 JASPAR yes 34435146
chr1 200299690 200299711 IRF1 JASPAR yes 34435147
chr1 200299692 200299707 PRDM1 JASPAR yes 34435148
Genes associated with rs5780019[chr1:200299701], comfirmed by eQTL
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More